Work in progress

• Ponciano J.M., J.P. Gomez, R.D. Holt, M. Barfield, W. Getz and J.K. Blackburn. Inferring processes from dynamic abundance time series. Methods in Ecology and Evolution. In Prep.
• Mavrodiev, E.V., J.P. Gomez, A. Melton, D. Steadman. The narrow circumscription of Phaeiris hexagonais fully congruent with the results of molecular and bioclimatic analyses of the presumable non-hybrid taxa of the genus Phaeiris (I. subsect. Hexagonae, Iridaceae). In Prep.

Manuscripts in review

• Yang, A., J.P. Gomez, J.K. Blackburn. Exploring Environmental Coverages of Species: A New Variable Selection Methodology for Rulesets from the Genetic Algorithm for Ruleset Prediction (GARP). ​Ecological Modeling. In Review.
• Martinez, A.E., E. Parra, J.P. Gomez, V.T. Vredenburg. Predator-Driven bilingualism in Amazonian Monkeys and Birds. Behavioral Ecology and Sociobiology. In Review.
• Chavarria-Pizarro T, J.P. Gomez,  J. Ungvari-Martin, R. Bay, M.M. Miyamoto, R. Kimball. Detecting phenotypic and genomic signatures of local adaptation along an environmental gradient in Mangrove Warbler. Molecular Ecology. In revision.
• Morales, C.C.*, J.P. Gomez, J.L. Parra. Morphological variation of Manacus manacus in Colombia: Effects of isolation by distance, environment and contact zones. Biological Journal of the Linnaean Society. In Revision.

Pre-prints

• Gomez, J. P., E. Ortiz-Acevedo, and J. E. Botero. Effects of shade coffee certification programs on bird, plant and butterfly diversity in Colombia. BioRxiv https://doi.org/10.1101/251231.
• Gomez, J.P., S.K. Robinson & J.M. Ponciano. Asymmetric immigration influences the structure of tropical bird meta-community community along a moisture gradient. BioRxiv https://doi.org/10.1101/251249.
• Gomez, J.P., J.M. Ponciano & S.K. Robinson. Rainfall effects on taxonomic, functional and phylogenetic turnover of lowland forest bird communities. BioRxiv https://doi.org/10.1101/251264.

Peer Reviewed Publications

1. Echeverri, A., L.O. Frishkoff, J.P. Gomez, J.R. Look, P.J. Juarez, R. Naidoo, K.M.A. Chan and D.S. Karp. Effects of precipitation and land use gradients on avian taxonomic phylogenetic and functional alpha diversity in northwestern Costa Rica. Diversity and Distributions. Accepted for publication.
2. Yang, A., J.P. Gomez, C.G. Haase, K.M. Profit, J.K. Blackburn. 2019. Effects of Brucellosis serological status on physiological conditions and behavioral mechanisms of southwestern Montana Elk. Journal of Wildlife Diseases 55 (2): 304 - 315.
3. Gomez, J.P., D. Nekorchuk, L. Mao, S.J. Ryan, J.M. Ponciano, J.K. Blackburn. 2018. Decoupling environmental effects and host population dynamics in a classic reservoir-driven disease. PLOS Biology.
4. Pulgarín, P., J.P. Gomez, S.K. Robinson, R.E. Ricklefs, and C.D. Cadena. 2018. Host Species, and not Environment, Predict Variation in Parasite Prevalence, Distribution, and Diversity along a Humidity Gradient in Northern South America. Ecology and Evolution. DOI: 10.1002/ece3.3785​.
5. Gomez, J.P., S.K. Robinson, J.K. Blackburn & J.M. Ponciano. 2017.  An efficient extension of N-mixture models for multi-species abundance estimation. Methods in Ecology and Evolution. DOI: 10.1111/2041-210X.12856.
6. Gillooly, J.F., J.P. Gomez and E.V. Mavrodiev. 2017. A broad-scale comparison of aerobic activity levels in vertebrates: endotherms versus ectotherm. Proceedings of the Royal Society of London B. 284: 20162328. 
7. Sandoval-Hernández, J*, J.P. Gomez, C.D. Cadena. 2017.  Is the largest river valley west of the Andes a driver of diversification in Neotropical lowland birds? The Auk. 134 (1): 168 - 180.
8. Zhong, M*. G.M. Hill, J.P. Gomez, D. Plotkin, J.R. Barber and A.Y. Kalahari. 2016. Quantification of wing shape and size variation in Saturniidae. Journal of Tropical Lepidoptera. 70 (2): 99 – 107.
9. Gillooly, J., J.P. Gomez, E. Mavrodiev, Y. Rong and E.S. McLamore. 2016. Structural constraints on passive oxygen diffusion explain body mass scaling of metabolic rate. Proceedings of the National Academy of Sciences. 113 (19): 5340 -5345.
10. Martinez, A., J.P. Gomez, J.M. Ponciano, and S.K. Robinson. 2016. Functional traits, Flocking propensity and perceived predation risk in an Amazonian understory bird community. The American Naturalist. 187 (5): 607 - 619.
11. Mavrodiev, E., J.P. Gomez, A. Laktionov and S.K. Robinson. 2015.  Invasive plant distributions recapitulate patterns found in native plant assemblages in a heterogeneous landscape. Ecosphere 6 (4): 48.
12. Martinez A. and J.P. Gomez. 2013.  Are Mixed-species flocks stable through two decades? The American Naturalist. 181: E53 - E59.
13. Cadena, C.D., K. H. Kozak, J. P. Gomez, J. L. Parra, C. M. McCain, R. C. K. Bowie, A. C. Carnaval, C. Moritz, C. Rahbek, T. E. Roberts, N. J. Sanders, C. Schneider, J. VanDerWal, K. Zamudio and C. H. Graham. 2012.  Latitude, elevational climatic zonation, and speciation in New World vertebrates. Proceedings of the Royal Society of London B, 279 (1726): 194 – 201.
14. Gomez J.P., G.A. Bravo, R.T. Brumfield, J.G. Tello and C.D. Cadena. 2010.  A phylogenetic approach to disentangling the role of competition and habitat filtering in community assembly of Neotropical forest birds. Journal of Animal Ecology, 78 (6): 1181 – 1192.

Book Chapters

1. Gomez, J.P. and S.K. Robinson. Aves del bosque seco tropical de Colombia: las comunidades del valle alto del río Magdalena. In: El Bosque Seco Tropical en Colombia. M.C. Pizano Editor. Ediciones Instituto Alexander von Humboldt. Bogota – Colombia. 2014.

* Shows publications with undergraduate/high school students.